Selected Publications

 

  • Dukka Bahadur K.C. and Dennis R Livesay, Topology improves phylogenetic motif functional site predictions, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 8:226-233, 2011.
  • Dukka Bahadur K.C., Improving Consensus Structure by Eliminating Averaging Artifacts, BMC Structural Biology, 9:12, 2009.
  • Dukka Bahadur K.C and Dennis R Livesay, Improving position specific predictions of protein functional sites using phylogenetic motifs, Bioinformatics, 24:2308-2316, 2008.
  • J.B. Brown, Dukka Bahadur K.C., Etsuji Tomita, Tatsuya Akutsu, Multiple methods for protein side chain packing using maximum weight cliques, Genome Informatics, 17-1, 3-12, 2006.
  • Dukka Bahadur K.C., Etsuji Tomita, Jun’ichi Suzuki, Katsuhisa Horimoto, and Tatsuya Akutsu, Protein Threading With Profiles and Distance Constraints Using Clique Based Algorithms, Journal of Bioinformatics and Computational Biology, 4:19-42, 2006
  • Dukka Bahadur K.C., Etsuji Tomita, Jun’ichi Suzuki and Tatsuya Akutsu, Protein side-chain packing problem: A maximum common edge-weight clique algorithmicapproach, Journal of Bioinformatics and Computational Biology, 3(1): 103-126, 2005.
  • Dukka Bahadur K.C., Tatsuya Akutsu, Etsuji Tomita, Tomokazu Seki, and Asao Fujiyama, Point Matching Under Non-uniform Distortions and Protein Side Chain Packing Based on an Efficient Clique Algorithm, Genome Informatics, 13: 143-152, 2002.